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PHRP : Osong Public Health and Research Perspectives

OPEN ACCESS. pISSN: 2210-9099. eISSN: 2233-6052

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"phylogeny"

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"phylogeny"

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<sec> <title>Objectives</title> <p>Infectious diarrhea is one of the most common causes of pediatric death worldwide and enteropathogenic <italic>Escherichia coli</italic> (EPEC) is one of the main causes. There are 2 subgroups of EPEC, typical and atypical, based on the presence or absence of bundle forming pili (bfp), of which atypical EPEC is considered less virulent, but not less pathogenic. Antimicrobial resistance towards atypical EPEC among children is growing and is considered a major problem. In this study the pattern of antibiotic resistance in clinical isolates was determined.</p></sec> <sec> <title>Methods</title> <p>Using 130 isolates, antibiotic resistance patterns and phenotypes were assessed, and genotypic profiles of extended spectrum β-lactamase (ESBL) production using disc diffusion and PCR was carried out. Phylogenetic groups were analyzed using quadruplex PCR.</p></sec> <sec> <title>Results</title> <p>There were 65 <italic>E. coli</italic> isolates identified as atypical EPEC by PCR, among which the highest antibiotic resistance was towards ampicillin, followed by trimethoprim-sulfamethoxazole, and tetracycline. Multidrug resistance was detected in 44.6% of atypical EPEC isolates. Around 33% of isolates were determined to be extended spectrum β-lactamase producers, and in 90% of isolates, genes responsible for ESBL production could be detected. Moreover, the majority of atypical EPEC strains belonged to Group E, followed by Groups B1, B2 and C.</p></sec> <sec> <title>Conclusion</title> <p>High rates of multidrug resistance and ESBL production among atypical EPEC isolates warrant periodical surveillance studies to select effective antibiotic treatment for patients. It is considered a critical step to manage antibiotic resistance by avoiding unnecessary prescriptions for antibiotics.</p></sec>

Citations

Citations to this article as recorded by  Crossref logo
  • Characteristics of antibiotic resistance of Escherichia coli strains in people suffering from gastroenteritis in the Republic of Guinea
    Balde Ramatoulaye, Alekseevna Kaftyreva Lidia, Alexandrovna Makarova Maria, Nikolaevna Matveeva Zoya, Evgenievich Polev Dmitry, Timurovna Saitova Alina, Kaba Lancei, Songomo Mountaga, Yéro Boiro Mamadou, Sahar Traore Mohamed
    African Journal of Microbiology Research.2025; 19(2): 11.     CrossRef
  • Drug Resistance and Molecular Typing Characteristics of Diarrheagenic Escherichia coli in Patients with Diarrhea in Chifeng, China
    Chunru Wei, Yanbo Bai, Lingxian Li, Huying Li, Peng Peng, Yunyao Zhao, Xiujun Sun, Huixia Yu
    Microbial Drug Resistance.2025; 31(6): 169.     CrossRef
  • A Comprehensive Review of the Role of Virulence Factors in Enteropathogenic Escherichia coli-Induced Intestinal Injury
    Owais M Ahmad , Seeme Rukh, Samuel Dos Santos Pereira, Ankita Saran, Vijay I Chandran, Alina Muneeb, Waldyr M Banderas Echeverry, Muyiwa Shoyoye , Damilare M Akintunde, Damilola Hassan, Zoya Morani, Lalain Masood
    Cureus.2025;[Epub]     CrossRef
  • Isolation, Enrichment and Analysis of Aerobic, Anaerobic, Pathogen-Free and Non-Resistant Cellulose-Degrading Microbial Populations from Methanogenic Bioreactor
    Lyudmila Dimitrova, Yana Ilieva, Dilnora Gouliamova, Vesselin Kussovski, Venelin Hubenov, Yordan Georgiev, Tsveta Bratanova, Mila Kaleva, Maya M. Zaharieva, Hristo Najdenski
    Genes.2025; 16(5): 551.     CrossRef
  • Genotypic and Technological Characterization of Lactic Acid Bacteria and Coagulase-Negative Staphylococci Isolated from Sucuk: A Preliminary Screening of Potential Starter Cultures
    Mükerrem Kaya, Bilge Sayın, Kübra Çinar Topçu, Mehmet Karadayı, Aybike Kamiloğlu, Medine Güllüce, Güzin Kaban
    Foods.2025; 14(20): 3495.     CrossRef
  • Antibacterial Efficacy of Feline-Derived Lactic Acid Bacteria against Enteropathogenic Escherichia coli: A Comprehensive In Vitro Analysis
    Weiwei Wang, Hao Dong, Qianqian Chen, Xiaohan Chang, Longjiao Wang, Chengyi Miao, Shuxing Chen, Lishui Chen, Ran Wang, Shaoyang Ge, Wei Xiong
    Fermentation.2024; 10(10): 514.     CrossRef
  • Phenotypic and molecular characterization of enteropathogenic Escherichia coli and Salmonella spp. causing childhood diarrhoea in Awka, South-Eastern Nigeria
    Ifeanyi Emmanuel Nwike, Malachy Chigozie Ugwu, Peter Chika Ejikeugwu, Nonye Treasure Ujam, Ifeanyichukwu Romanus Iroha, Charles Okechukwu Esimone
    Bulletin of the National Research Centre.2023;[Epub]     CrossRef
  • Antimicrobial Resistance and Biofilm Formation of Escherichia coli Isolated from Pig Farms and Surroundings in Bulgaria
    Mila D. Kaleva, Yana Ilieva, Maya Margaritova Zaharieva, Lyudmila Dimitrova, Tanya Chan Kim, Iva Tsvetkova, Yordan Georgiev, Petya Orozova, Krasimir Nedev, Hristo Najdenski
    Microorganisms.2023; 11(8): 1909.     CrossRef
  • Isolation and Molecular Characterization of Proteus mirabilis Bacteria from Poultry Meat in the Iraqi Market and a Study of their Resistance to some Antibiotics
    Ammar H. Hamed, Ahmed I. Alnazzal
    IOP Conference Series: Earth and Environmental Sci.2023; 1262(6): 062019.     CrossRef
  • Virulence and phylogenetic analysis of enteric pathogenic Escherichia coli isolated from children with diarrhoea in South Africa
    Ntando W. Alfinete, John Y. Bolukaoto, Lee Heine, Natasha Potgieter, Tobias G. Barnard
    International Journal of Infectious Diseases.2022; 114: 226.     CrossRef
  • Prevalence of extended-spectrum β-lactamases, AmpC, and carbapenemases in Proteus mirabilis clinical isolates
    Mona Shaaban, Soha Lotfy Elshaer, Ola A. Abd El-Rahman
    BMC Microbiology.2022;[Epub]     CrossRef
  • Enteropathogenic Escherichia coli—A Summary of the Literature
    Anca Delia Mare, Cristina Nicoleta Ciurea, Adrian Man, Bianca Tudor, Valeriu Moldovan, Luminița Decean, Felicia Toma
    Gastroenterology Insights.2021; 12(1): 28.     CrossRef
  • Prevalence of Antibiotic-Resistant Escherichia coli Isolated from Swine Faeces and Lagoons in Bulgaria
    Lyudmila Dimitrova, Mila Kaleva, Maya M. Zaharieva, Christina Stoykova, Iva Tsvetkova, Maya Angelovska, Yana Ilieva, Vesselin Kussovski, Sevda Naydenska, Hristo Najdenski
    Antibiotics.2021; 10(8): 940.     CrossRef
  • 13,158 View
  • 152 Download
  • 9 Web of Science
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Epidemiological Characteristics of Field Tick-Borne Pathogens in Gwang-ju Metropolitan Area, South Korea, from 2014 to 2018
Jung Wook Park, Seung Hun Lee, Gi Seong Lee, Jin Jong Seo, Jae Keun Chung
Osong Public Health Res Perspect 2020;11(4):177-184.
Published online August 31, 2020
DOI: https://doi.org/10.24171/j.phrp.2020.11.4.06
<sec> <title>Objectives</title> <p>The importance of tick-borne diseases is increasing because of climate change, with a lack of long-term studies on tick-borne pathogens in South Korea. To understand the epidemiological characteristics of tick-borne diseases, the monthly distribution of field ticks throughout the year was studied in South Korea between May 2014 and April 2018 in a cross sectional study.</p></sec> <sec> <title>Methods</title> <p>The presence of various tick-borne pathogens (<italic>Rickettsia</italic> species, <italic>Borrelia</italic> species, <italic>Anaplasma phagocytophilum</italic>) was confirmed by using polymerase chain reaction, to provide information for a prevention strategy against tick-borne pathogenic infections, through increased understanding of the relationship between seasonal variation and risk of infection with <italic>Rickettsia</italic> species. This was performed using logistic regression analysis (SPSS 20, IBM, USA) of the data obtained from the study.</p></sec> <sec> <title>Results</title> <p>During the study period there were 11,717 ticks collected and 4 species identified. <italic>Haemapysalis longicornis</italic> was the most common species (<italic>n</italic> = 10,904, 93.1%), followed by <italic>Haemapysalis flava</italic> (<italic>n</italic> = 656, 5.6%), <italic>Ixodes nipponensis</italic> (<italic>n</italic> = 151, 1.3%), and <italic>Amblyomma testudinarium</italic> (<italic>n</italic> = 6, 0.05%) The results of this cross-sectional study showed that <italic>Haemapysalis flava</italic> carried a higher risk of transmission of <italic>Rickettsia</italic> species than other tick species (<italic>p</italic> < 0.05).</p></sec> <sec> <title>Conclusion</title> <p>In conclusion, due attention should be paid to preventing tick-borne infections in humans whilst engaged in outdoor activities in Spring and Autumn, particularly in places where there is a high prevalence of ticks.</p></sec>

Citations

Citations to this article as recorded by  Crossref logo
  • Long-term ecological surveillance of hard ticks (Acari: Ixodidae) and SFTSV in Dangjin, South Korea (2018–2024)
    Hyeon Jun Shin, Jun Yang Jeong, Chan Eui Hong, Hyeok Lee, Kyoung Won Lee, Wook-Gyo Lee, Jie Eun Park, Dae Kwon Song, Cho-I. Moon, Hee Ju Hwang, Yong Seok Lee
    Parasites & Vectors.2026;[Epub]     CrossRef
  • Comparative Genomics of Two Newly Sequenced Rodent-Derived and One Previously Reported Tick-Derived Borrelia garinii Strains from South Korea Reveals Plasmid Variation and Virulence Gene Diversity
    Hyungsuk Kang, Yeon-Joo Choi, Ji-Young Park, Kwangjun Lee, Won-Jong Jang
    Pathogens.2025; 14(11): 1182.     CrossRef
  • Distribution and pathogen prevalence of field-collected ticks from south-western Korea: a study from 2019 to 2022
    Kwang gon Kim, Da jeong Hwang, Jung wook Park, Mi geum Ryu, Yujin Kim, So-Jin Yang, Ji-Eun Lee, Gi seong Lee, Ju Hye Lee, Ji sun Park, Jung mi Seo, Sun-hee Kim
    Scientific Reports.2024;[Epub]     CrossRef
  • Molecular Identification of Spotted Fever Group Rickettsiae in Ticks in the Republic of Korea
    Ji-Ye Seo, Jin-Seo Park, Hee-Il Lee, Jung-Won Ju
    Pathogens.2024; 13(7): 575.     CrossRef
  • Whole genome sequence and comparative genomic analysis of novel Rickettsia koreansis strain CNH17-7 isolated from human
    Taeuk Kang, Yeon-Joo Choi, Jeoungyeon Kim, Hye-Jin Park, Won-Jong Jang
    European Journal of Clinical Microbiology & Infect.2024; 43(10): 1909.     CrossRef
  • Effective Methods of Estimation of Pathogen Prevalence in Pooled Ticks
    Gerardo Fracasso, Marika Grillini, Laura Grassi, Francesco Gradoni, Graziana da Rold, Michela Bertola
    Pathogens.2023; 12(4): 557.     CrossRef
  • Applying next generation sequencing to detect tick-pathogens in Dermacentor nuttalli, Ixodes persulcatus, and Hyalomma asiaticum collected from Mongolia
    Graham A. Matulis, Jira Sakolvaree, Bazartseren Boldbaatar, Nora Cleary, Ratree Takhampunya, B. Katherine Poole-Smith, Abigail A. Lilak, Doniddemberel Altantogtokh, Nyamdorj Tsogbadrakh, Nitima Chanarat, Nittayaphon Youngdech, Erica J. Lindroth, Jodi M. F
    Ticks and Tick-borne Diseases.2023; 14(5): 102203.     CrossRef
  • Molecular Detection of Anaplasma phagocytophilum and Ehrlichia Species in Ticks Removed from Humans in the Republic of Korea
    Yu-Jung Kim, Ji Ye Seo, Seong Yoon Kim, Hee Il Lee
    Microorganisms.2022; 10(6): 1224.     CrossRef
  • Molecular Detection and Phylogeny of Tick-Borne Pathogens in Ticks Collected from Dogs in the Republic of Korea
    A-Tai Truong, Jinhyeong Noh, Yeojin Park, Hyun-Ji Seo, Keun-Ho Kim, Subin Min, Jiyeon Lim, Mi-Sun Yoo, Heung-Chul Kim, Terry A. Klein, Hyunkyoung Lee, Soon-Seek Yoon, Yun Sang Cho
    Pathogens.2021; 10(5): 613.     CrossRef
  • iSeq 100 for metagenomic pathogen screening in ticks
    Ju Yeong Kim, Myung-hee Yi, Alghurabi Areej Sabri Mahdi, Tai-Soon Yong
    Parasites & Vectors.2021;[Epub]     CrossRef
  • Molecular Identification of Borrelia spp. from Ticks in Pastures Nearby Livestock Farms in Korea
    Haeseung Lee, Seung-Hun Lee, SungShik Shin, Dongmi Kwak
    Insects.2021; 12(11): 1011.     CrossRef
  • 11,771 View
  • 154 Download
  • 13 Web of Science
  • Crossref
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