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PHRP : Osong Public Health and Research Perspectives

OPEN ACCESS. pISSN: 2210-9099. eISSN: 2233-6052

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"efflux pump"

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"efflux pump"

Original Articles
Genetic profiling of the tolC component of the acrAB-TolC efflux pump in clinical Klebsiella pneumoniae isolates: a cross-sectional study in Pontianak, Indonesia
Mardhia Mardhia, Delima Fajar Liana, Sari Eka Pratiwi, Mahyarudin Mahyarudin, Risa Agustina
Osong Public Health Res Perspect 2026;17(3):254-261.
Published online April 20, 2026
DOI: https://doi.org/10.24171/j.phrp.2025.0573
Genetic profiling of the tolC component of the acrAB-TolC efflux pump in clinical Klebsiella pneumoniae isolates: a cross-sectional study in Pontianak, Indonesia
Objectives
Klebsiella pneumoniae is a leading cause of hospital-acquired infections. Its increasing prevalence poses substantial challenges to both hospital and public health systems due to the emergence of multidrug-resistant strains. Understanding the epidemiology of K. pneumoniae and its antimicrobial resistance characteristics may support antimicrobial stewardship and infection control programs. A cross-sectional study was conducted from June to November 2025. Methods: A total of 62 isolates underwent phenotypic identification and antimicrobial susceptibility testing using the BD Phoenix system (Becton Dickinson), followed by molecular detection of K. pneumoniae and efflux pump genes. Sanger sequencing was performed on isolates positive for the tolC gene. Results: Among the isolates, 66.1% were classified as extended-spectrum β-lactamase (ESBL) producers, 6.5% as carbapenem-resistant Enterobacterales (CRE), and 6.5% as both ESBL and CRE producers. Most clinical isolates were resistant to ampicillin, cefazolin, ceftazidime, ceftriaxone, ciprofloxacin, and cefepime. The acrAB and tolC genes were detected in all 62 isolates. One isolate showed a genetic profile similar to that of the K. pneumoniae KP 52.145 strain. Conclusion: This study demonstrated a high prevalence of antibiotic resistance among K. pneumoniae isolates and confirmed the presence of efflux pump genes, including tolC, with observable genetic variability. Further investigation of tolC gene evolution is essential, as these genes play critical roles in antibiotic resistance mechanisms.
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Resistance to Fluoroquinolone by a Combination of Efflux and Target Site Mutations in Enteroaggregative Escherichia coli Isolated in Korea
Jun-Young Kim, Se-Mi Jeon, Hyungjun Kim, Nara Lim, Mi-Sun Park, Seong-Han Kim
Osong Public Health Res Perspect 2012;3(4):239-244.
Published online December 31, 2012
DOI: https://doi.org/10.1016/j.phrp.2012.11.002
Objectives
Enteroaggregative <i>Escherichia coli</i> (EAEC) was recently reported as a major diarrheagenic pathogen in infant and adult travelers, both in developing and developed countries. EAEC strains are known to be highly resistant to antibiotics including quinolones. Therefore in this study we have determined the various mechanisms of quinolone resistance in EAEC strains isolated in Korea.
Methods
For 26 EAEC strains highly resistant to fluoroquinolone, minimal inhibitory concentrations for fluoroquinolones were determined, mutations in the quinolone target genes were identified by PCR and sequencing, the presence of transferable quinolone resistance mechanism were identified by PCR, and the contribution of the efflux pump was determined by synergy tests using a proton pump inhibitor. The expression levels of efflux pump-related genes were identified by relative quantification using real-time PCR.
Results
Apart from two, all tested isolates had common mutations on GyrA (Ser83Leu and Ser87Gly) and ParC (Ser80Gln). Isolates EACR24 and EACR39 had mutations that have not been reported previously: Ala81Pro in ParC and Arg157Gly in GyrA, respectively. Increased susceptibility of all the tested isolates to ciprofloxacin and norfloxacin in the presence of the pump inhibitor implies that efflux pumps contributed to the resistance against fluoroquinolones. Expression of the efflux pump-related genes, <i>tolC</i>, <i>mdfA</i>, and <i>ydhE</i>, were induced in isolates EACR 07, EACR 29, and EACR 33 in the presence of ciprofloxacin.
Conclusion
These results indicate that quinolone resistance of EAEC strains mainly results from the combination of mutations in the target enzyme and an increased expression of efflux pump-related genes. The mutations Ala81Pro in ParC and Arg157Gly in GyrA have not been reported previously the exact influence of these mutations should be investigated further.

Citations

Citations to this article as recorded by  Crossref logo
  • Pathovars, occurrence, and characterization of plasmid-mediated quinolone resistance in diarrheal Escherichia coli isolated from farmers and farmed chickens in Tunisia and Nigeria
    Nazek AL-GALLAS, Mohamed-Elamen Fadel, Khadijah A Altammar, Yasmin Awadi, Ridha Ben Aissa
    Letters in Applied Microbiology.2024;[Epub]     CrossRef
  • Characterization of Pathogenic Escherichia coli Isolates from Food-borne Outbreaks in Gyeonggi-do, Korea
    So-Jung Park, Il-Hyung Jeong, Sun-Mok Kwon, Eun-Seon Hur, Kyung-Ja Kang, Ju-Hee Kwon, Bum-Ho Kim, Yong-Bae Park
    Journal of Bacteriology and Virology.2024; 54(2): 155.     CrossRef
  • Detection of gyrA and parC Mutations and Prevalence of Plasmid-Mediated Quinolone Resistance Genes in Klebsiella pneumoniae
    Sawsan Mohammed Kareem, Israa MS Al-kadmy, Saba S Kazaal, Alaa N Mohammed Ali, Sarah Naji Aziz, Rabab R Makharita, Abdelazeem M Algammal, Salim Al-Rejaie, Tapan Behl, Gaber El-Saber Batiha, Mohamed A El-Mokhtar, Helal F Hetta
    Infection and Drug Resistance.2021; Volume 14: 555.     CrossRef
  • Fluoroquinolone-Transition Metal Complexes: A Strategy to Overcome Bacterial Resistance
    Mariana Ferreira, Paula Gameiro
    Microorganisms.2021; 9(7): 1506.     CrossRef
  • Frequency of DNA gyrase and topoisomerase IV mutations and plasmid-mediated quinolone resistance genes among Escherichia coli and Klebsiella pneumoniae isolated from urinary tract infections in Azerbaijan, Iran
    Robab Azargun, Mohammad Hossein Soroush Barhaghi, Hossein Samadi Kafil, Mahin Ahangar Oskouee, Vahid Sadeghi, Mohammad Yousef Memar, Reza Ghotaslou
    Journal of Global Antimicrobial Resistance.2019; 17: 39.     CrossRef
  • Evaluating the efficacy of an algae-based treatment to mitigate elicitation of antibiotic resistance
    Kassandra L. Grimes, Laura J. Dunphy, Erica M. Loudermilk, A. Jasmin Melara, Glynis L. Kolling, Jason A. Papin, Lisa M. Colosi
    Chemosphere.2019; 237: 124421.     CrossRef
  • Resistance mechanisms ofHelicobacter pyloriand its dual target precise therapy
    Yuehua Gong, Yuan Yuan
    Critical Reviews in Microbiology.2018; 44(3): 371.     CrossRef
  • E. coli Group 1 Capsular Polysaccharide Exportation Nanomachinary as a Plausible Antivirulence Target in the Perspective of Emerging Antimicrobial Resistance
    Shivangi Sachdeva, Raghuvamsi V. Palur, Karpagam U. Sudhakar, Thenmalarchelvi Rathinavelan
    Frontiers in Microbiology.2017;[Epub]     CrossRef
  • Plasmid-Mediated Quinolone Resistance in Different Diarrheagenic Escherichia coli Pathotypes Responsible for Complicated, Noncomplicated, and Traveler's Diarrhea Cases
    Silvia Herrera-León, María Teresa Llorente, Sergio Sánchez
    Antimicrobial Agents and Chemotherapy.2016; 60(3): 1950.     CrossRef
  • Determinants of quinolone resistance in Escherichia coli causing community-acquired urinary tract infection in Bejaia, Algeria
    Yanat Betitra, Vinuesa Teresa, Viñas Miguel, Touati Abdelaziz
    Asian Pacific Journal of Tropical Medicine.2014; 7(6): 462.     CrossRef
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A Contribution of MdfA to Resistance to Fluoroquinolones in Shigella flexneri
Jun-Young Kim, Se-Mi Jeon, Hyungjun Kim, Mi-Sun Park, Seong-Han Kim
Osong Public Health Res Perspect 2011;2(3):216-217.
Published online December 31, 2011
DOI: https://doi.org/10.1016/j.phrp.2011.11.049
In this study, we measured the drug resistance conferred by <i>mdfA</i> mutations in two <i>Shigella flexneri</i> strains. A mutant in <i>mdfA</i> genes was constructed by polymerase chain reaction–based, one-step inactivation of chromosomal genes. The antimicrobial susceptibility of parent and mutant strains to fluoroquinolones was determined by minimal inhibitory concentration (MICs). The <i>△mdfA</i> mutants were somewhat more susceptible to fluoroquinolones than the parent strains. The low level changes in MICs of the <i>△mdfA</i> mutants suggest that <i>mdfA</i> contributed the fluoroquinolone resistance in <i>S flexneri</i>. This finding found that the increased expression level of an MdfA efflux pump mediated fluoroquinolone resistance, but it is not likely a major effecter of higher resistance levels.

Citations

Citations to this article as recorded by  Crossref logo
  • Mechanisms of resistance and decreased susceptibility to azithromycin in Shigella
    Zohreh Ghalavand, Parisa Behruznia, Mansoor Kodori, Hamed Afkhami, Elham Isaei, Foroogh Neamati, Solmaz Mahmoodzadeh Poornaki
    Gene Reports.2024; 37: 102011.     CrossRef
  • Comparative genomics analysis of Raoultella planticola S25 isolated from duck in China, with florfenicol resistance
    Yabo Liu, Fei Wu, Qing Chen, Yuanyuan Ying, Yi Jiang, Junwan Lu, Xi Lin, Kewei Li, Teng Xu, Qiyu Bao, Liyan Ni
    Comparative Immunology, Microbiology and Infectiou.2020; 68: 101398.     CrossRef
  • Efflux pumps of Gram-negative bacteria in brief
    Ibtesam Ghadban Auda, Istabreq M. Ali Salman, Jameelah Gh. Odah
    Gene Reports.2020; 20: 100666.     CrossRef
  • Molecular Characterization of a Multidrug-Resistant Klebsiella pneumoniae Strain R46 Isolated from a Rabbit
    Fei Wu, Yuanyuan Ying, Min Yin, Yi Jiang, Chongyang Wu, Changrui Qian, Qianqian Chen, Kai Shen, Cong Cheng, Licheng Zhu, Kewei Li, Teng Xu, Qiyu Bao, Junwan Lu
    International Journal of Genomics.2019; 2019: 1.     CrossRef
  • Emergence of antibiotic resistant Shigella species: A matter of concern
    Minakshi Puzari, Mohan Sharma, Pankaj Chetia
    Journal of Infection and Public Health.2018; 11(4): 451.     CrossRef
  • Update on:Shigellanew serogroups/serotypes and their antimicrobial resistance
    D.P. Muthuirulandi Sethuvel, N.K. Devanga Ragupathi, S. Anandan, B. Veeraraghavan
    Letters in Applied Microbiology.2017; 64(1): 8.     CrossRef
  • The Challenge of Efflux-Mediated Antibiotic Resistance in Gram-Negative Bacteria
    Xian-Zhi Li, Patrick Plésiat, Hiroshi Nikaido
    Clinical Microbiology Reviews.2015; 28(2): 337.     CrossRef
  • Anti-Bacillusand Anti-ShigellaActivities of the Essential Oil fromPerilla fruescensvar.japonicaHara
    H. Lim, S. Shin
    Journal of Essential Oil Bearing Plants.2014; 17(2): 309.     CrossRef
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  • 36 Download
  • Crossref
Alterations of gyrA, gyrB, and parC and Activity of Efflux Pump in Fluoroquinolone-resistant Acinetobacter baumannii
Sunok Park, Kyeong Min Lee, Yong Sun Yoo, Jung Sik Yoo, Jae Il Yoo, Hwa Su Kim, Yeong Seon Lee, Gyung Tae Chung
Osong Public Health Res Perspect 2011;2(3):164-170.
Published online December 31, 2011
DOI: https://doi.org/10.1016/j.phrp.2011.11.040
Objectives
This study investigated the fluoroquinolone-resistant mechanism of 56 clinical cases of <i>A baumannii</i> infection from 23 non-tertiary hospitals, collected between 2004 and 2006.
Methods
Susceptibility testing was performed by broth microdilution and Epsilometer test. Analyses of quinolone resistance-determining region (QRDR) were done by sequencing. The activity of the efflux pump was measured using inhibitors.
Results
The sequences from selected 56 isolates were divided into seven groups (I-VII) on the basis of mutations in <i>gyrA</i> (S83L), <i>parC</i> (S80L, S80W and S84K) and <i>gyrB</i> (containing the novel mutations E679D, D644Y and A677V). The 27 isolates with triple mutations in <i>gyrA, gyrB</i> and <i>parC</i> (groups IV-VII) showed higher levels of resistance to ciprofloxacin (minimal inhibitory concentration [MIC] of 16-256 μg/mL) than the 26 isolates with double mutations in <i>gyrA</i> and <i>parC</i> (groups II and III, MIC of 8-64 μ g/mL; <i>p</i> < 0.05). Alterations in the efflux pump were observed in four isolates with the <i>parC</i> S80L mutation (group II) or E84K mutation (group VII), but no effect was observed in an isolate with the <i>parC</i> S80 W mutation (group III).
Conclusion
These results suggest that triple mutations in clinical isolates of <i>A baumannii</i> contribute to the development of high levels of resistance to fluoroquinolones and that mutations in <i>parC</i> S80L or E84K (groups II and VII) may contribute to alterations in efflux pump activity in <i>A baumannii</i>.

Citations

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  • Ciprofloxacin resistance enhances biofilm formation and modulates virulence in Acinetobacter baumannii: Insights into the role of efflux pumps and quorum sensing
    Sérgio G. Mendes, Sofia I. Combo, Thibault Allain, Inês Mó, Sara Domingues, Andre G. Buret, Gabriela J. Da Silva
    European Journal of Clinical Microbiology & Infect.2026; 45(4): 1141.     CrossRef
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    APMIS.2026;[Epub]     CrossRef
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    Teodora Marinova-Bulgaranova, Preslava Hristova, Polya Marinovska, Nikolay Balgaranov, Vladislav Nankov, Slavil Peykov, Hristina Hitkova
    Microorganisms.2026; 14(8): 1618.     CrossRef
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    Yi Fan, Xianqin Yang
    Food Reviews International.2026; : 1.     CrossRef
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    Saranya Adukkadukkam, Hanka Brangsch, Tamara Kozytska, Sonika Kar, Pavithra Rajkumar, Chandra Sekhar Suppala, P. Anand Kumar, Gamal Wareth, Jayaseelan Murugaiyan
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  • INVESTIGATION OF DNA GYRASE RESISTANCE GENES IN ACINETOBACTER BAUMANNII ISOLATES
    Uğur Kayiş, Tammam Sipahi, Suzan Ökten, Fatma Kaynak Onurdağ
    Ankara Universitesi Eczacilik Fakultesi Dergisi.2025; 49(1): 6.     CrossRef
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    Frontiers in Microbiology.2023;[Epub]     CrossRef
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  • The effect of the efflux pump inhibitor Carbonyl Cyanide m-Chlorophenylhydrazone (CCCP) on the susceptibility to imipenem and cefepime in clinical strains of Acinetobacter baumannii
    Alejandra Sanchez-Carbonel, Belén Mondragón, Nicolás López-Chegne, Isaac Peña-Tuesta, Gladys Huayan-Dávila, Dora Blitchtein, Hugo Carrillo-Ng, Wilmer Silva-Caso, Miguel Angel Aguilar-Luis, Juana del Valle-Mendoza, Iddya Karunasagar
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  • Effects of different resistance mechanisms on antimicrobial resistance in Acinetobacter baumannii: a strategic system for screening and activity testing of new antibiotics
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    International Journal of Antimicrobial Agents.2020; 55(4): 105918.     CrossRef
  • Antibiotic Resistance Profiles, Molecular Mechanisms and Innovative Treatment Strategies of Acinetobacter baumannii
    Corneliu Ovidiu Vrancianu, Irina Gheorghe, Ilda Barbu Czobor, Mariana Carmen Chifiriuc
    Microorganisms.2020; 8(6): 935.     CrossRef
  • Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in Acinetobacter baumannii
    Chandler Roe, Charles H. D. Williamson, Adam J. Vazquez, Kristen Kyger, Michael Valentine, Jolene R. Bowers, Paul D. Phillips, Veronica Harrison, Elizabeth Driebe, David M. Engelthaler, Jason W. Sahl
    Frontiers in Public Health.2020;[Epub]     CrossRef
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    Balaram Khamari, Manmath Lama, Chanakya Pachi Pulusu, Amarendra Pratap  Biswal, Sai Manoz Lingamallu, Bhargava Sai Mukkirla, Amit Kumar Sahoo, Harioum Sambhu Narayan Dash, Rewa Sharda, Prakash Kumar, Eswarappa Pradeep Bulagonda
    Medical Principles and Practice.2020; 29(6): 580.     CrossRef
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